published Peer-Reviewed Papers:
Bold denotes lab member and *denotes lab student or postdoc author
59. Lee, RM, N Griffin, E Jones, BW Abbott, RJ Frei, S Bratsman, M Proteau, IM Errigo, A Shogren, WB Bowden, JP Zarnetske, and Z Aanderud (2022) Bacterioplankton dispersal and biogeochemical function across Alaskan Arctic catchments. Environmental Microbiology. https://doi.org/10.1111/1462-2920.16259
58. Diamond, JS, G Pinay, S Bernal, MJ Cohen, D Lewis, A Lupon, JP Zarnetske, F Moatar (2022) Light and hydrologic connectivity drive dissolved oxygen synchrony in stream networks. Limnology and Oceanography. https://doi.org/10.1002/lno.12271
57. Ward, AS, A Packman, S Bernal, N Brekenfeld, J Drummond, E Graham, DM Hannah, M Klaar, S Krause, M Kurz, A Li, A Lupon, F Mao, ME Martí Roca, V Ouellet, T Royer, J Stegen, JP Zarnetske (2022) Advancing river corridor science beyond disciplinary boundaries with an inductive approach to catalyze hypothesis generation. Hydrological Processes, 36( 4), e14540. https://doi.org/10.1002/hyp.14540
56. Abbott, BW, J Carey, JG Ernakovich, J Frederick, L Guo, G Hugelius, PJ Mann, R Lee, MM Loranty, R Macdonald, S Natali, D Olefeldt, A Rec, M Robards, VG Salmon, C Schädel, T Schuur, S Shakil, *AJ Shogren, J Strauss, S Tank, BF Thornton, R Treharne, M Turetsky, C Voigt, Y Yang, JP Zarnetske, Q Zhang, S Zolkos (2022) We Must Stop Fossil Fuel Emissions to Protect Permafrost Ecosystems. Frontiers in Environmental Science, https://doi.org/10.3389/fenvs.2022.889428
55. Krause, S, B Abbott, V Baranov, S Bernal, P Blaen, T Datry, J Drummond, J Fleckenstein, J Gomez-Velez, DM Hannah, J Knapp, M Kurz, J Lewandowski, E Marty, C Mendoza-Lera, A Milner, A Packman, G Pinay, AS Ward, JP Zarnetske (2022) Organizational principles of hyporheic exchange flow and biogeochemical cycling across scales. Water Resources Research. https://doi.org/10.1029/2021WR029771
54. CUAHSI Board of Directors & Officers. (2022). COVID-19 Impacts Highlight the Need for Holistic Evaluation of Research and in the Hydrologic Sciences. Water Resources Research, 58, https://doi.org/10.1029/2021WR030930 *JP Zarnetske is on Board of Directors and contributed to the co-generation of this publication.
53. *Shogren, AJ, JP Zarnetske, *BW Abbott, S Bratsman, B Brown, MP Carey, R Fulweber, HE Greaves, *E Haines, F Iannucci, JC Koch, A Medvedeff, JA O'Donnell, L Patch, BA Poulin, *TJ Williamson, WB Bowden (2022) Multi-year, spatially extensive, watershed-scale synoptic stream chemistry and water quality conditions for six permafrost-underlain Arctic watersheds, Earth Syst. Sci. Data, 14, 95–116, https://doi.org/10.5194/essd-14-95-2022
52. Aho, KS, JH Fair, JD Hosen, ED Kyzivat, L Logozzo, LC Weber, B Yoon, JP Zarnetske, PA Raymond (2022). An intense precipitation event causes a temperate forested drainage network to shift from N2O source to sink. Limnol Oceanogr. https://doi.org/10.1002/lno.12006
51. Arora, B, MA Briggs, JP Zarnetske, J Stegen, J Gomez-Valez, D Dwivedi, and C Steefel (2021) Hot Spots and Hot Moments in the Critical Zone: Identification of and Incorporation into Reactive Transport Models. Springer-Nature.
50. *Abbott, BW, Rocha, AV, *Shogren, A, *Zarnetske, JP, Iannucci, F, Bowden, WB, Bratsman, SP, Patch, L, Watts, R, Fulweber, R, Frei, RJ, Huebner, AM, Ludwig, SM, Carling, GT and O’Donnell, JA (2021), Tundra wildfire triggers sustained lateral nutrient loss in Alaskan Arctic. Glob. Change Biol., 27: 1408-1430. https://doi.org/10.1111/gcb.15507
49. *Shogren, A, JP Zarnetske, BW Abbott, F Iannucci, A Medvedeff, *S Cairns, *M Duda, and WB Bowden (2021) Arctic concentration-discharge relationships for dissolved organic carbon and nitrate vary with landscape and season. Limnology and Oceanography. https://doi.org/10.1002/lno.11682
48. Sayedi, SS, BW Abbott, BF Thornton, J Frederick, JE Vonk, P Overduin, C Schädel, EAG Schuur, A Bourbonnais, A Gavrilov, S He, G Hugelius, M Jakobsson, M Jones, D Joung, G Kraev, RW Macdonald, AD McGuire, C Mu, M O'Regan, KM Schreiner, C Stranne, E Pizhankova, A Vasiliev, S Westermann, JP Zarnetske, T Zhang, M Ghandehari, S Baeumler, B Brown, RJ Frei, A Maslakov (2021) Subsea permafrost carbon stocks and climate change sensitivity estimated by expert assessment. Environmental Research Letters. https://doi.org/10.1088/1748-9326/abcc29
47. Wologo, E., S Shakil, S Zolkos, S Textor, S Ewing, J Klassen, RGM Spencer, DC Podgorski, SE Tank, MA Baker, JA O’Donnell, KP Wickland, SSW Foks, JP Zarnetske, *J Lee-Cullin, F Liu, Y Yang, P Kortelainen, J Kolehmainen, JF Dean, JE Vonk, RM Holmes, G Pinay, MM Powell, J Howe, R Frei, SP Bratsman, and *BW Abbott (2021) Stream dissolved organic matter in permafrost regions shows surprising compositional similarities but negative priming and nutrient effects. Global Biogeochemical Cycles. https://doi.org/10.1029/2020GB006719
46. *Shogren AJ, JP Zarnetske, BW Abbott, F Iannucci, and WB Bowden (2020) We cannot shrug off the shoulder seasons: addressing knowledge and data gaps in an Arctic headwater. Environmental Research Letters 15, 104027. https://doi.org/10.1088/1748-9326/ab9d3c
45. *Hampton, TB., JP Zarnetske, MA Briggs, F MahmoodPoor Dehkordy, K Singha, FD Day-Lewis, JW Harvey, S Roy Chowdhury and JW Lane. (2020) Experimental shifts of hydrologic residence time in a sandy urban stream sediment–water interface alter nitrate removal and nitrous oxide fluxes. Biogeochemistry 149, 195–219. https://doi.org/10.1007/s10533-020-00674-7.
44. *Roy Chowdhury, S, JP Zarnetske, MS Phanikumar, MA Briggs, FD Day-Lewis, and K Singha (2020). Formation criteria for hyporheic anoxic microzones: Assessing interactions of hydraulics, nutrients and biofilms. Water Resources Research, https://doi.org/10.1029/2019WR025971
43. Comer-Warner, S, J Knapp, P Blaen, M Klaar, F Shelley, JP Zarnetske, *J Lee-Cullin, S Folegot, M Kurz, J Lewandowski, J Harvey, A Ward, C Mendoza-Lera, S Ullah, T Datry, N Kettridge, D Gooddy, J Drummond, E Martí, A Milner, D Hannah, and S Krause (2020) The method controls the story - sampling method impacts on the detection of pore-water nitrogen concentrations in streambeds. Science of the Total Environment, 709, https://doi.org/10.1016/j.scitotenv.2019.136075
42. *Shogren, A, JP Zarnetske, *BW Abbott, F Iannucci, R Frei, NA Griffin, and WB Bowden (2019) Revealing biogeochemical signatures of Arctic landscapes with river chemistry. Scientific Reports, 9(1): 12894, DOI: 10.1038/s41598-019-49296-6.
41. Ward, AS, M Kurz, N Schmadel, J Knapp, P Blaen, C Harman, J Drummond, D Hannah, S Krause, A Li, E Marti, A Milner, K Neil, M Miller, *S Plont, A Packman, N Wisnoski, S Wondzell, and JP Zarnetske. (2019) Solute transport and transformation in an intermittent, headwater mountain stream with diurnal discharge fluctuations. Water. 11(11), 2208; https://doi.org/10.3390/w11112208.
40. Ward, AS, JP Zarnetske, et al. (2019) Co-located contemporaneous mapping of morphological, hydrological, chemical, and biological conditions in a 5th order mountain stream network, Oregon, USA. Earth System Science Data, 11, 1567–1581, https://doi.org/10.5194/essd-11-1567-2019.
39. Ward, AS, S Wondzell, N Schmadel, S Herzog, JP Zarnetske, et al. (2019) Spatial and temporal variation in river corridor exchange across a 5th order mountain stream network. Hydrology and Earth System Sciences
38. *Abbott, BA, K Bishop, JP Zarnetske, DM Hannah, RJ Frei, C Minaudo, FS Chapin III, S Krause, L Conner, D Ellison, SE Godsey, *S Plont, J Marçais, T Kolbe, A Huebner, *T Hampton, S Gu, M Buhman, SS Sayedi, O Ursache, M Chapin, KD Henderson, G Pinay (2019) A water cycle for the Anthropocene. Hydrological Processes DOI: 10.1002/hyp.13544
37. *Abbott, BA, K Bishop, JP Zarnetske, C Minaudo, FS Chapin III, S Krause, DM Hannah, L Conner, D Ellison, SE Godsey, *S Plont, J Marçais, T Kolbe, A Huebner, R Frei, *TB Hampton, S Gu, M Buhman, O Ursache, M Chapin, KD Henderson, G Pinay (2019) Human domination of the global water cycle excluded from depictions and perceptions. Nature Geoscience.
36. MahmoodPoor Dehkordy, F, MA Briggs, FD Day-Lewis, K Singha, Ashton Krajnovich, *TB Hampton, JP Zarnetske, C Scruggs, AC Bagtzoglou (2019). Multi-scale preferential flow processes in an urban streambed under variable hydraulic conditions, J.. of Hydrology, 573, 168-179. https://doi.org/10.1016/j.jhydrol.2019.03.022.
35. Kelleher, C, A Ward, JLA Knapp, PJ Blaen, MJ Kurz, JD Drummond, JP Zarnetske, DM Hannah, C Mendoza-Lera, NM Schmadel, T Datry, J Lewandowski, AM Milner, and S Krause (2019) Exploring Tracer Information and Model Framework Trade-offs to Improve Estimation of Stream Transient Storage Processes, Water Resources Research, 55, 3481– 3501. https://doi.org/10.1029/2018WR023585
34. *Hampton, TB, JP Zarnetske, MA Briggs, K Singha, JW Harvey, FD Day-Lewis, F MahmoodPoor Dehkordy, and JW Lane (2019) Residence time controls the fate of nitrogen in flow-through lakebed sediments. JGR-Biogeosciences, 124, 689– 707. https://doi.org/10.1029/2018JG004741
33. Zarnetske, JP, M Bouda, *BW Abbott, J Saiers, and PA Raymond (2018) Generality of hydrologic transport limitation of watershed organic carbon flux across ecoregions of the United States. Geophysical Research Letters, 45. https://doi.org/10.1029/2018GL080005
32. *Lee‐Cullin, JA, JP Zarnetske, *SS Ruhala, and *S Plont. (2018), Toward measuring biogeochemistry within the stream‐groundwater interface at the network scale: An initial assessment of two spatial sampling strategies. Limnol Oceanogr Methods. . doi:10.1002/lom3.10277
31. Briggs, MA, FD Day‐Lewis, F MahmoodPoor Dehkordy, *T Hampton, JP Zarnetske, CR Scruggs, K Singha, JW Harvey, and JW Lane (2018), Direct Observations of Hydrologic Exchange Occurring with Less‐Mobile Porosity and the Development of Anoxic Microzones in Sandy Lakebed Sediments. Water Resour. Res.. doi:10.1029/2018WR022823
30. Blaen PJ, MJ Kurz, JD Drummond, JLA Knapp, C Mendoz-Lera, NM Schmadel, MJ Klaar, A Jager, S Folegot, *J Lee-Cullin, AS Ward, JP Zarnetske, T Datry, AM Milner, J Lewandowski, DM Hannah, S Krause (2018) Woody debris is related to reach-scale hotspots of lowland stream ecosystem respiration under baseflow conditions. Ecohydrology. 2018;e1952. https://doi.org/10.1002/eco.1952
29. *Abbott BW, G Gruau, JP Zarnetske, F Moatar, L Barbe, Z Thomas, O Fovet, T. Kolbe, S Gu, AC Pierson-Wickmann, P Davy, G Pinay. (2018) Unexpected structure and synchrony of water quality in headwater stream networks. Ecology Letters. DOI: 10.1111/ele.12897.
See press release and Public Radio interview here:
28. *Ruhala SS, JP Zarnetske, DT Long, *JA Lee-Cullin, *S Plont, and *ER Wiewiora. (2017) Exploring dissolved organic carbon cycling at the stream-groundwater interface across a third-order, lowland stream network. Biogeochemistry. https://doi.org/10.1007/s10533-017-0404-z.
27. Folegot, S, DM Hannah, SJ Dugdale, MJ Kurz, JD Drummond, MJ Klaar, *J Lee-Cullin, T Keller, E Martí, JP Zarnetske, AS Ward and S Krause (2017). "Low flow controls on stream thermal dynamics." Limnologica - Ecology and Management of Inland Waters. http://dx.doi.org/10.1016/j.limno.2017.08.003
26. Pavelsky, TM, and JP Zarnetske (2017), Rapid decline in river icings detected in Arctic Alaska: Implications for a changing hydrologic cycle and river ecosystems, Geophys. Res. Lett., 44, doi:10.1002/2016GL072397.
See press release and some representative news articles here:
25. Baranov, V, D Milosevic, MJ Kurz, JP Zarnetske, F Sabater, E Martí, A Robertson, T Brandt, A Sorolla, J Lewandowski, and S Krause (2017) Helophyte impacts on the response of hyporheic invertebrate communities to inundation events in intermittent streams. Ecohydrology. 10.1002/eco.1857.
24. Kurz MJ, JD Drummond, E Martí, JP Zarnetske, *J Lee-Cullin, MJ Klaar, S Folegot, T Keller, AS Ward, JH Fleckenstein, T Datry, DM Hannah, and S Krause (2017) Impacts of water level on metabolism and transient storage in vegetated lowland rivers - insights from a mesocosm study. J. Geophys. Res. 10.1002/2016JG003695.
23. *Ruhala, S., and J.P. Zarnetske. (2016) Using in-situ optical sensors to study dissolved organic carbon dynamics of streams and watersheds: A review. Science of the Total Environment. http://dx.doi.org/10.1016/j.scitotenv.2016.09.113.
22. Schmadel, NM, A Ward, M Kurz, JP Zarnetske et al. (2016), Stream solute tracer timescales changing with discharge and reach length confound process interpretation, Water Resour. Res., 52, doi:10.1002/2015WR018062.
21. Briggs, MA, FD Day-Lewis, Zarnetske, JP, and JW Harvey (2015) A physical explanation for the development of redox microzones in hyporheic flow. Geophysical Research Letters, 42, doi: 10.1002/2015GL064200.
20. Zarnetske, JP, and PL Zarnetske (2015) Strategies for creating a conspicuous, effective, and memorable poster presentation. GSA Today, 25(5), doi: 10.1130/GSATG228GW.1.
19. Zarnetske, JP, R Haggerty, and SM Wondzell (2015) Coupling multi-scale observations to evaluate hyporheic nitrate removal at the reach scale. Freshwater Science, 34, doi: 10.1086/680011.
18. Roley, SS, JR Griffiths, PS Levi, CJ Patrick, S Sadro, and JP Zarnetske (2015) Taking the pulse of the ecosystem: progress in quantifying aquatic ecosystem health. Limnology and Oceanography. doi: 10.4319/ecodas.2014.978-0-9845591-4-5.101.
17. Mazza, R, S Wondzell, and JP Zarnetske. (2014) The stream subsurface: nitrogen cycling and the cleansing function of hyporheic zones. Science Findings 166. Portland, OR: U.S. Department of Agriculture, Forest Service, Pacific Northwest Research Station. pp 6.
16. Yoon, HD, D Cox, D Albert, N Mori, H Smith, and JP Zarnetske. (2013) Ecological modeling of emergent vegetation for sustaining wetlands in high wave energy coastal environments. Coastal Structures, 1 & 2: 992-1001.
15. Ward, AS, MN Gooseff, TJ Voltz, M Fitzgerald, K Singha, and JP Zarnetske (2013) How does rapidly changing discharge during storm events affect transient storage and channel water balance in a headwater mountain stream? Water Resour. Res. 49, doi:10.1002/wrcr.20434.
14. Zarnetske, JP, R Haggerty, SM Wondzell, V Bokil, and R González-Pinzón. (2012) Coupled transport and reaction kinetics control the nitrate source-sink function of hyporheic zones. Water Resour. Res. 48, W11508, doi:10.1029/2012WR011894.
13. Zarnetske, JP, R Haggerty, SM Wondzell, and MA Baker. (2011) Labile dissolved organic carbon supply controls hyporheic denitrification. J. Geophys. Res., 116, G04036, doi:10.1029/2011JG001730. *A Top Downloaded 2012 JGR Article*
12. Zarnetske, JP, R Haggerty, SM Wondzell, and MA Baker. (2011) Dynamics of nitrate production and removal as a function of residence time in the hyporheic zone. J. Geophys. Res., 116, G01025, doi:10.1029/2010JG001356. *Web of Science Highly Cited Paper (paper received enough citations to place it in the top 1% of its academic field based on a highly cited threshold for the field and publication year); 2011 Editors Choice, AGU Eos Research Spotlight; A Top Downloaded 2011 JGR Article*
11. Argerich, A, R Haggerty, M Eugènia, S Francesc, and JP Zarnetske. (2011) Quantification of metabolically active transient storage (MATS) in two reaches with contrasting transient storage and ecosystem respiration. J. Geophys. Res., 116, G03034, doi: 10.1029/2010JG001379.
10. Brosten, TR, JH Bradford, JP McNamara, MG Gooseff, JP Zarnetske, WB Bowden, and ME Johnson. (2009) Estimating 3D variation in active-layer thickness beneath arctic streams using ground-penetrating radar. J. of Hydrology, 373(304): 479-486, doi:10.1016/j.jhydrol.2009.05.011
9. Brosten, TR, JH Bradford, JP McNamara, MG Gooseff, JP Zarnetske, WB Bowden, and ME Johnson. (2009) Multi-offset GPR methods for hyporheic zone investigations. Near Surface Geophysics. 7(4): 247-257, doi: 10.3997/1873-0604.2008034.
8. Zarnetske, JP, MN Gooseff, WB Bowden, Greenwald MJ, JP McNamara, JH Bradford, and TR Brosten. (2008) Influence of morphology and permafrost dynamics on hyporheic exchange in arctic headwater streams under warming climate conditions, Geophys. Res. Lett., 35, L02501, doi:10.1029/2007GL032049.
7. Crook, N, A Binley, R Knight, DA Robinson, JP Zarnetske, and R Haggerty. (2008) Electrical resistivity imaging of the architecture of substream sediments. Water Resour. Res., 44, W00D13, doi:10.1029/2008WR006968.
6. Gooseff, MN, RA Payn, JP Zarnetske, WB Bowden, JP McNamara, and JH Bradford. (2008) Comparison of in-channel mobile-immobile zone exchange during instantaneous and constant-rate stream tracer additions: Implications for design and interpretation of non-conservative tracer experiments. J. of Hydrology, 357: 112-124, doi:10.1016/j.jhydrol.2008.05.006.
5. Payn, RA, MN Gooseff, DA Benson, OA Cirpka, JP Zarnetske, WB Bowden, JP McNamara, and JH Bradford. (2008) Comparison of instantaneous and constant-rate stream tracer experiments through non-parametric analysis of residence time distributions, Water Resour. Res., 44, W06404, doi:10.1029/2007WR006274.
4. Greenwald, MJ, WB Bowden, MN Gooseff, JP Zarnetske, JP McNamara, JH Bradford, and TR Brosten (2008) Hyporheic exchange and water chemistry of two arctic tundra streams of contrasting geomorphology, J. Geophys. Res., 113, G02029, doi:10.1029/2007JG000549.
3. Bowden, WB, MJ Greenwald, MN Gooseff, JP Zarnetske, JP McNamara, J Bradford, and T Brosten (2008) Carbon, nitrogen, and phosphorus interactions in the hyporheic zones of arctic streams draining areas of continuous permafrost, eds. DL Kane, and KM Hinkel, Ninth International Conference on Permafrost, Institute of Northern Engineering, 165-170.
2. Zarnetske, JP, MN Gooseff, WB Bowden, TR Brosten, JH Bradford, and JP McNamara. (2007) Transient storage as a function of geomorphology, discharge, and permafrost active layer conditions in Arctic tundra streams, Water Resour. Res., 43, W07410, doi:10.1029/2005WR004816.
1. Brosten, TR, JH Bradford, JP McNamara, JP Zarnetske, MG Gooseff, and WB Bowden. (2006) Profiles of temporal thaw depths beneath two arctic stream types using ground-penetrating radar. Permafrost Periglac. Process., 17: 341–355. doi: 10.1002/ppp.566.
58. Diamond, JS, G Pinay, S Bernal, MJ Cohen, D Lewis, A Lupon, JP Zarnetske, F Moatar (2022) Light and hydrologic connectivity drive dissolved oxygen synchrony in stream networks. Limnology and Oceanography. https://doi.org/10.1002/lno.12271
57. Ward, AS, A Packman, S Bernal, N Brekenfeld, J Drummond, E Graham, DM Hannah, M Klaar, S Krause, M Kurz, A Li, A Lupon, F Mao, ME Martí Roca, V Ouellet, T Royer, J Stegen, JP Zarnetske (2022) Advancing river corridor science beyond disciplinary boundaries with an inductive approach to catalyze hypothesis generation. Hydrological Processes, 36( 4), e14540. https://doi.org/10.1002/hyp.14540
56. Abbott, BW, J Carey, JG Ernakovich, J Frederick, L Guo, G Hugelius, PJ Mann, R Lee, MM Loranty, R Macdonald, S Natali, D Olefeldt, A Rec, M Robards, VG Salmon, C Schädel, T Schuur, S Shakil, *AJ Shogren, J Strauss, S Tank, BF Thornton, R Treharne, M Turetsky, C Voigt, Y Yang, JP Zarnetske, Q Zhang, S Zolkos (2022) We Must Stop Fossil Fuel Emissions to Protect Permafrost Ecosystems. Frontiers in Environmental Science, https://doi.org/10.3389/fenvs.2022.889428
55. Krause, S, B Abbott, V Baranov, S Bernal, P Blaen, T Datry, J Drummond, J Fleckenstein, J Gomez-Velez, DM Hannah, J Knapp, M Kurz, J Lewandowski, E Marty, C Mendoza-Lera, A Milner, A Packman, G Pinay, AS Ward, JP Zarnetske (2022) Organizational principles of hyporheic exchange flow and biogeochemical cycling across scales. Water Resources Research. https://doi.org/10.1029/2021WR029771
54. CUAHSI Board of Directors & Officers. (2022). COVID-19 Impacts Highlight the Need for Holistic Evaluation of Research and in the Hydrologic Sciences. Water Resources Research, 58, https://doi.org/10.1029/2021WR030930 *JP Zarnetske is on Board of Directors and contributed to the co-generation of this publication.
53. *Shogren, AJ, JP Zarnetske, *BW Abbott, S Bratsman, B Brown, MP Carey, R Fulweber, HE Greaves, *E Haines, F Iannucci, JC Koch, A Medvedeff, JA O'Donnell, L Patch, BA Poulin, *TJ Williamson, WB Bowden (2022) Multi-year, spatially extensive, watershed-scale synoptic stream chemistry and water quality conditions for six permafrost-underlain Arctic watersheds, Earth Syst. Sci. Data, 14, 95–116, https://doi.org/10.5194/essd-14-95-2022
52. Aho, KS, JH Fair, JD Hosen, ED Kyzivat, L Logozzo, LC Weber, B Yoon, JP Zarnetske, PA Raymond (2022). An intense precipitation event causes a temperate forested drainage network to shift from N2O source to sink. Limnol Oceanogr. https://doi.org/10.1002/lno.12006
51. Arora, B, MA Briggs, JP Zarnetske, J Stegen, J Gomez-Valez, D Dwivedi, and C Steefel (2021) Hot Spots and Hot Moments in the Critical Zone: Identification of and Incorporation into Reactive Transport Models. Springer-Nature.
50. *Abbott, BW, Rocha, AV, *Shogren, A, *Zarnetske, JP, Iannucci, F, Bowden, WB, Bratsman, SP, Patch, L, Watts, R, Fulweber, R, Frei, RJ, Huebner, AM, Ludwig, SM, Carling, GT and O’Donnell, JA (2021), Tundra wildfire triggers sustained lateral nutrient loss in Alaskan Arctic. Glob. Change Biol., 27: 1408-1430. https://doi.org/10.1111/gcb.15507
49. *Shogren, A, JP Zarnetske, BW Abbott, F Iannucci, A Medvedeff, *S Cairns, *M Duda, and WB Bowden (2021) Arctic concentration-discharge relationships for dissolved organic carbon and nitrate vary with landscape and season. Limnology and Oceanography. https://doi.org/10.1002/lno.11682
48. Sayedi, SS, BW Abbott, BF Thornton, J Frederick, JE Vonk, P Overduin, C Schädel, EAG Schuur, A Bourbonnais, A Gavrilov, S He, G Hugelius, M Jakobsson, M Jones, D Joung, G Kraev, RW Macdonald, AD McGuire, C Mu, M O'Regan, KM Schreiner, C Stranne, E Pizhankova, A Vasiliev, S Westermann, JP Zarnetske, T Zhang, M Ghandehari, S Baeumler, B Brown, RJ Frei, A Maslakov (2021) Subsea permafrost carbon stocks and climate change sensitivity estimated by expert assessment. Environmental Research Letters. https://doi.org/10.1088/1748-9326/abcc29
47. Wologo, E., S Shakil, S Zolkos, S Textor, S Ewing, J Klassen, RGM Spencer, DC Podgorski, SE Tank, MA Baker, JA O’Donnell, KP Wickland, SSW Foks, JP Zarnetske, *J Lee-Cullin, F Liu, Y Yang, P Kortelainen, J Kolehmainen, JF Dean, JE Vonk, RM Holmes, G Pinay, MM Powell, J Howe, R Frei, SP Bratsman, and *BW Abbott (2021) Stream dissolved organic matter in permafrost regions shows surprising compositional similarities but negative priming and nutrient effects. Global Biogeochemical Cycles. https://doi.org/10.1029/2020GB006719
46. *Shogren AJ, JP Zarnetske, BW Abbott, F Iannucci, and WB Bowden (2020) We cannot shrug off the shoulder seasons: addressing knowledge and data gaps in an Arctic headwater. Environmental Research Letters 15, 104027. https://doi.org/10.1088/1748-9326/ab9d3c
- Press Release: New understanding of Arctic watersheds uncovered and LTER Network Story 'Stop giving early and late seasons the 'cold shoulder'
45. *Hampton, TB., JP Zarnetske, MA Briggs, F MahmoodPoor Dehkordy, K Singha, FD Day-Lewis, JW Harvey, S Roy Chowdhury and JW Lane. (2020) Experimental shifts of hydrologic residence time in a sandy urban stream sediment–water interface alter nitrate removal and nitrous oxide fluxes. Biogeochemistry 149, 195–219. https://doi.org/10.1007/s10533-020-00674-7.
44. *Roy Chowdhury, S, JP Zarnetske, MS Phanikumar, MA Briggs, FD Day-Lewis, and K Singha (2020). Formation criteria for hyporheic anoxic microzones: Assessing interactions of hydraulics, nutrients and biofilms. Water Resources Research, https://doi.org/10.1029/2019WR025971
43. Comer-Warner, S, J Knapp, P Blaen, M Klaar, F Shelley, JP Zarnetske, *J Lee-Cullin, S Folegot, M Kurz, J Lewandowski, J Harvey, A Ward, C Mendoza-Lera, S Ullah, T Datry, N Kettridge, D Gooddy, J Drummond, E Martí, A Milner, D Hannah, and S Krause (2020) The method controls the story - sampling method impacts on the detection of pore-water nitrogen concentrations in streambeds. Science of the Total Environment, 709, https://doi.org/10.1016/j.scitotenv.2019.136075
42. *Shogren, A, JP Zarnetske, *BW Abbott, F Iannucci, R Frei, NA Griffin, and WB Bowden (2019) Revealing biogeochemical signatures of Arctic landscapes with river chemistry. Scientific Reports, 9(1): 12894, DOI: 10.1038/s41598-019-49296-6.
41. Ward, AS, M Kurz, N Schmadel, J Knapp, P Blaen, C Harman, J Drummond, D Hannah, S Krause, A Li, E Marti, A Milner, K Neil, M Miller, *S Plont, A Packman, N Wisnoski, S Wondzell, and JP Zarnetske. (2019) Solute transport and transformation in an intermittent, headwater mountain stream with diurnal discharge fluctuations. Water. 11(11), 2208; https://doi.org/10.3390/w11112208.
40. Ward, AS, JP Zarnetske, et al. (2019) Co-located contemporaneous mapping of morphological, hydrological, chemical, and biological conditions in a 5th order mountain stream network, Oregon, USA. Earth System Science Data, 11, 1567–1581, https://doi.org/10.5194/essd-11-1567-2019.
39. Ward, AS, S Wondzell, N Schmadel, S Herzog, JP Zarnetske, et al. (2019) Spatial and temporal variation in river corridor exchange across a 5th order mountain stream network. Hydrology and Earth System Sciences
38. *Abbott, BA, K Bishop, JP Zarnetske, DM Hannah, RJ Frei, C Minaudo, FS Chapin III, S Krause, L Conner, D Ellison, SE Godsey, *S Plont, J Marçais, T Kolbe, A Huebner, *T Hampton, S Gu, M Buhman, SS Sayedi, O Ursache, M Chapin, KD Henderson, G Pinay (2019) A water cycle for the Anthropocene. Hydrological Processes DOI: 10.1002/hyp.13544
37. *Abbott, BA, K Bishop, JP Zarnetske, C Minaudo, FS Chapin III, S Krause, DM Hannah, L Conner, D Ellison, SE Godsey, *S Plont, J Marçais, T Kolbe, A Huebner, R Frei, *TB Hampton, S Gu, M Buhman, O Ursache, M Chapin, KD Henderson, G Pinay (2019) Human domination of the global water cycle excluded from depictions and perceptions. Nature Geoscience.
36. MahmoodPoor Dehkordy, F, MA Briggs, FD Day-Lewis, K Singha, Ashton Krajnovich, *TB Hampton, JP Zarnetske, C Scruggs, AC Bagtzoglou (2019). Multi-scale preferential flow processes in an urban streambed under variable hydraulic conditions, J.. of Hydrology, 573, 168-179. https://doi.org/10.1016/j.jhydrol.2019.03.022.
35. Kelleher, C, A Ward, JLA Knapp, PJ Blaen, MJ Kurz, JD Drummond, JP Zarnetske, DM Hannah, C Mendoza-Lera, NM Schmadel, T Datry, J Lewandowski, AM Milner, and S Krause (2019) Exploring Tracer Information and Model Framework Trade-offs to Improve Estimation of Stream Transient Storage Processes, Water Resources Research, 55, 3481– 3501. https://doi.org/10.1029/2018WR023585
- Selected for a 2019 WRR Editor's Choice Award.
34. *Hampton, TB, JP Zarnetske, MA Briggs, K Singha, JW Harvey, FD Day-Lewis, F MahmoodPoor Dehkordy, and JW Lane (2019) Residence time controls the fate of nitrogen in flow-through lakebed sediments. JGR-Biogeosciences, 124, 689– 707. https://doi.org/10.1029/2018JG004741
33. Zarnetske, JP, M Bouda, *BW Abbott, J Saiers, and PA Raymond (2018) Generality of hydrologic transport limitation of watershed organic carbon flux across ecoregions of the United States. Geophysical Research Letters, 45. https://doi.org/10.1029/2018GL080005
32. *Lee‐Cullin, JA, JP Zarnetske, *SS Ruhala, and *S Plont. (2018), Toward measuring biogeochemistry within the stream‐groundwater interface at the network scale: An initial assessment of two spatial sampling strategies. Limnol Oceanogr Methods. . doi:10.1002/lom3.10277
31. Briggs, MA, FD Day‐Lewis, F MahmoodPoor Dehkordy, *T Hampton, JP Zarnetske, CR Scruggs, K Singha, JW Harvey, and JW Lane (2018), Direct Observations of Hydrologic Exchange Occurring with Less‐Mobile Porosity and the Development of Anoxic Microzones in Sandy Lakebed Sediments. Water Resour. Res.. doi:10.1029/2018WR022823
30. Blaen PJ, MJ Kurz, JD Drummond, JLA Knapp, C Mendoz-Lera, NM Schmadel, MJ Klaar, A Jager, S Folegot, *J Lee-Cullin, AS Ward, JP Zarnetske, T Datry, AM Milner, J Lewandowski, DM Hannah, S Krause (2018) Woody debris is related to reach-scale hotspots of lowland stream ecosystem respiration under baseflow conditions. Ecohydrology. 2018;e1952. https://doi.org/10.1002/eco.1952
29. *Abbott BW, G Gruau, JP Zarnetske, F Moatar, L Barbe, Z Thomas, O Fovet, T. Kolbe, S Gu, AC Pierson-Wickmann, P Davy, G Pinay. (2018) Unexpected structure and synchrony of water quality in headwater stream networks. Ecology Letters. DOI: 10.1111/ele.12897.
See press release and Public Radio interview here:
28. *Ruhala SS, JP Zarnetske, DT Long, *JA Lee-Cullin, *S Plont, and *ER Wiewiora. (2017) Exploring dissolved organic carbon cycling at the stream-groundwater interface across a third-order, lowland stream network. Biogeochemistry. https://doi.org/10.1007/s10533-017-0404-z.
27. Folegot, S, DM Hannah, SJ Dugdale, MJ Kurz, JD Drummond, MJ Klaar, *J Lee-Cullin, T Keller, E Martí, JP Zarnetske, AS Ward and S Krause (2017). "Low flow controls on stream thermal dynamics." Limnologica - Ecology and Management of Inland Waters. http://dx.doi.org/10.1016/j.limno.2017.08.003
26. Pavelsky, TM, and JP Zarnetske (2017), Rapid decline in river icings detected in Arctic Alaska: Implications for a changing hydrologic cycle and river ecosystems, Geophys. Res. Lett., 44, doi:10.1002/2016GL072397.
See press release and some representative news articles here:
25. Baranov, V, D Milosevic, MJ Kurz, JP Zarnetske, F Sabater, E Martí, A Robertson, T Brandt, A Sorolla, J Lewandowski, and S Krause (2017) Helophyte impacts on the response of hyporheic invertebrate communities to inundation events in intermittent streams. Ecohydrology. 10.1002/eco.1857.
24. Kurz MJ, JD Drummond, E Martí, JP Zarnetske, *J Lee-Cullin, MJ Klaar, S Folegot, T Keller, AS Ward, JH Fleckenstein, T Datry, DM Hannah, and S Krause (2017) Impacts of water level on metabolism and transient storage in vegetated lowland rivers - insights from a mesocosm study. J. Geophys. Res. 10.1002/2016JG003695.
23. *Ruhala, S., and J.P. Zarnetske. (2016) Using in-situ optical sensors to study dissolved organic carbon dynamics of streams and watersheds: A review. Science of the Total Environment. http://dx.doi.org/10.1016/j.scitotenv.2016.09.113.
22. Schmadel, NM, A Ward, M Kurz, JP Zarnetske et al. (2016), Stream solute tracer timescales changing with discharge and reach length confound process interpretation, Water Resour. Res., 52, doi:10.1002/2015WR018062.
21. Briggs, MA, FD Day-Lewis, Zarnetske, JP, and JW Harvey (2015) A physical explanation for the development of redox microzones in hyporheic flow. Geophysical Research Letters, 42, doi: 10.1002/2015GL064200.
20. Zarnetske, JP, and PL Zarnetske (2015) Strategies for creating a conspicuous, effective, and memorable poster presentation. GSA Today, 25(5), doi: 10.1130/GSATG228GW.1.
19. Zarnetske, JP, R Haggerty, and SM Wondzell (2015) Coupling multi-scale observations to evaluate hyporheic nitrate removal at the reach scale. Freshwater Science, 34, doi: 10.1086/680011.
18. Roley, SS, JR Griffiths, PS Levi, CJ Patrick, S Sadro, and JP Zarnetske (2015) Taking the pulse of the ecosystem: progress in quantifying aquatic ecosystem health. Limnology and Oceanography. doi: 10.4319/ecodas.2014.978-0-9845591-4-5.101.
17. Mazza, R, S Wondzell, and JP Zarnetske. (2014) The stream subsurface: nitrogen cycling and the cleansing function of hyporheic zones. Science Findings 166. Portland, OR: U.S. Department of Agriculture, Forest Service, Pacific Northwest Research Station. pp 6.
16. Yoon, HD, D Cox, D Albert, N Mori, H Smith, and JP Zarnetske. (2013) Ecological modeling of emergent vegetation for sustaining wetlands in high wave energy coastal environments. Coastal Structures, 1 & 2: 992-1001.
15. Ward, AS, MN Gooseff, TJ Voltz, M Fitzgerald, K Singha, and JP Zarnetske (2013) How does rapidly changing discharge during storm events affect transient storage and channel water balance in a headwater mountain stream? Water Resour. Res. 49, doi:10.1002/wrcr.20434.
14. Zarnetske, JP, R Haggerty, SM Wondzell, V Bokil, and R González-Pinzón. (2012) Coupled transport and reaction kinetics control the nitrate source-sink function of hyporheic zones. Water Resour. Res. 48, W11508, doi:10.1029/2012WR011894.
13. Zarnetske, JP, R Haggerty, SM Wondzell, and MA Baker. (2011) Labile dissolved organic carbon supply controls hyporheic denitrification. J. Geophys. Res., 116, G04036, doi:10.1029/2011JG001730. *A Top Downloaded 2012 JGR Article*
12. Zarnetske, JP, R Haggerty, SM Wondzell, and MA Baker. (2011) Dynamics of nitrate production and removal as a function of residence time in the hyporheic zone. J. Geophys. Res., 116, G01025, doi:10.1029/2010JG001356. *Web of Science Highly Cited Paper (paper received enough citations to place it in the top 1% of its academic field based on a highly cited threshold for the field and publication year); 2011 Editors Choice, AGU Eos Research Spotlight; A Top Downloaded 2011 JGR Article*
11. Argerich, A, R Haggerty, M Eugènia, S Francesc, and JP Zarnetske. (2011) Quantification of metabolically active transient storage (MATS) in two reaches with contrasting transient storage and ecosystem respiration. J. Geophys. Res., 116, G03034, doi: 10.1029/2010JG001379.
10. Brosten, TR, JH Bradford, JP McNamara, MG Gooseff, JP Zarnetske, WB Bowden, and ME Johnson. (2009) Estimating 3D variation in active-layer thickness beneath arctic streams using ground-penetrating radar. J. of Hydrology, 373(304): 479-486, doi:10.1016/j.jhydrol.2009.05.011
9. Brosten, TR, JH Bradford, JP McNamara, MG Gooseff, JP Zarnetske, WB Bowden, and ME Johnson. (2009) Multi-offset GPR methods for hyporheic zone investigations. Near Surface Geophysics. 7(4): 247-257, doi: 10.3997/1873-0604.2008034.
8. Zarnetske, JP, MN Gooseff, WB Bowden, Greenwald MJ, JP McNamara, JH Bradford, and TR Brosten. (2008) Influence of morphology and permafrost dynamics on hyporheic exchange in arctic headwater streams under warming climate conditions, Geophys. Res. Lett., 35, L02501, doi:10.1029/2007GL032049.
7. Crook, N, A Binley, R Knight, DA Robinson, JP Zarnetske, and R Haggerty. (2008) Electrical resistivity imaging of the architecture of substream sediments. Water Resour. Res., 44, W00D13, doi:10.1029/2008WR006968.
6. Gooseff, MN, RA Payn, JP Zarnetske, WB Bowden, JP McNamara, and JH Bradford. (2008) Comparison of in-channel mobile-immobile zone exchange during instantaneous and constant-rate stream tracer additions: Implications for design and interpretation of non-conservative tracer experiments. J. of Hydrology, 357: 112-124, doi:10.1016/j.jhydrol.2008.05.006.
5. Payn, RA, MN Gooseff, DA Benson, OA Cirpka, JP Zarnetske, WB Bowden, JP McNamara, and JH Bradford. (2008) Comparison of instantaneous and constant-rate stream tracer experiments through non-parametric analysis of residence time distributions, Water Resour. Res., 44, W06404, doi:10.1029/2007WR006274.
4. Greenwald, MJ, WB Bowden, MN Gooseff, JP Zarnetske, JP McNamara, JH Bradford, and TR Brosten (2008) Hyporheic exchange and water chemistry of two arctic tundra streams of contrasting geomorphology, J. Geophys. Res., 113, G02029, doi:10.1029/2007JG000549.
3. Bowden, WB, MJ Greenwald, MN Gooseff, JP Zarnetske, JP McNamara, J Bradford, and T Brosten (2008) Carbon, nitrogen, and phosphorus interactions in the hyporheic zones of arctic streams draining areas of continuous permafrost, eds. DL Kane, and KM Hinkel, Ninth International Conference on Permafrost, Institute of Northern Engineering, 165-170.
2. Zarnetske, JP, MN Gooseff, WB Bowden, TR Brosten, JH Bradford, and JP McNamara. (2007) Transient storage as a function of geomorphology, discharge, and permafrost active layer conditions in Arctic tundra streams, Water Resour. Res., 43, W07410, doi:10.1029/2005WR004816.
1. Brosten, TR, JH Bradford, JP McNamara, JP Zarnetske, MG Gooseff, and WB Bowden. (2006) Profiles of temporal thaw depths beneath two arctic stream types using ground-penetrating radar. Permafrost Periglac. Process., 17: 341–355. doi: 10.1002/ppp.566.